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HUPO CONNECT 2020 POSTERS

  • HUPO Connect 2020 Posters

    • Total Presentations: 220

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    • P001 - Proteome Integral Solubility Alteration assay in zebrafish embryo for exploring exposure to bioactive compounds including pollutants (View Slides)

      Keyword: Activity and Chemical Proteomics

      Susana Cristobal

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    • P003 - The interaction between SSV1 transcriptional regulator F55 and RadA host protein is the molecular sensor of the UV-induced DNA dama (View Slides)

      Keyword: Activity and Chemical Proteomics

      Maria Monti

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    • P004 - A robust and flexible approach for quantifying protein turnover rates across an entire proteome (View Slides)

      Keyword: Bioinformatics and Statistics

      Josue Baeza

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    • P005 - CoronaMassKB: an open-access platform for sharing of mass spectrometry data and reanalyses from SARS-CoV-2 and related species (View Slides)

      Keyword: Bioinformatics and Statistics

      Nuno Bandeira

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    • P006 - How the UniProt Proteins API can facilitate the analysis of proteomics data. (View Slides)

      Keyword: Bioinformatics and Statistics

      Emily Bowler-Barnett

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    • P007 - New label-free methods for protein relative quantification applied to the investigation of animal model of Huntington Disease (View Slides)

      Keyword: Bioinformatics and Statistics

      Flora Cozzolino

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    • P010 - The PSI Universal Spectrum Identifier (USI) (View Slides)

      Keyword: Bioinformatics and Statistics

      Eric Deutsch

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    • P011 - BIONDA: A free database for a fast information on published biomarkers (View Slides)

      Keyword: Bioinformatics and Statistics

      Anika Frericks-Zipper

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    • P012 - mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics - 2020 Update (View Presentation)

      Keyword: Bioinformatics and Statistics

      Nils Hoffmann

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    • P013 - Accelerating the speed of ion library generation using fast microflow DDA and cloud processing (View Slides)

      Keyword: Bioinformatics and Statistics

      Arianna Jones

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    • P014 - Simple targeted assays for metabolic pathways and signaling: a powerful tool for targeted proteomics (View Presentation)

      Keyword: Bioinformatics and Statistics

      Dominik Kopczynski

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    • P016 - A new algorithm for FAIMS data analysis with accurate in-depth quantitative profiling (View Slides)

      Keyword: Bioinformatics and Statistics

      Jonathan Krieger

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    • P017 - In-Silico Construction of Homo sapiens Antimicrobial and Immunomodulatory Peptide Database DEAMP (View Slides)

      Keyword: Bioinformatics and Statistics

      Ajneesh Kumar

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    • P018 - OpenTIMS & TimsPy: Open Access to timsTOF Pro Raw Data (View Slides)

      Keyword: Bioinformatics and Statistics

      Mateusz Lacki

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    • P019 - MealTime-MS: A machine learning-guided real-time mass spectrometry analysis for protein identification and efficient dynamic exclusi (View Slides)

      Keyword: Bioinformatics and Statistics

      Mathieu Lavall

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    • P020 - Common Decoy Distribution as an alternative to dataset-specific decoy-based FDR control in shotgun proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Dominik Madej

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    • P021 - MASH Explorer, a Universal, Comprehensive, and User-friendly Software Environment for Top-down Proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Sean McIlwain

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    • P022 - Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to HPP (View Slides)

      Keyword: Bioinformatics and Statistics

      Gilbert Omenn

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    • P023 - Assessment of quantitation and statistical methods for DIA mass spectrometry-based proteomics data (View Slides)

      Keyword: Bioinformatics and Statistics

      Thang Pham

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    • P024 - Novel Protein-level probabilistic score and FDR estimation approach for protein identification in large-scale shotgun proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Gorka Prieto

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    • P025 - PointNovo: instrument-resolution-independent de novo peptide sequencing for high-resolution devices (View Slides)

      Keyword: Bioinformatics and Statistics

      Rui Qiao

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    • P026 - Integrating Prosit with Deepsearch such that Dozens of PTMs can be Potentially Searched Directly Against Deepsearch DIA Data (View Slides)

      Keyword: Bioinformatics and Statistics

      Gautam Saxena

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    • P027 - Characterization of peptide-protein relationships in protein ambiguity groups via bipartite graphs for an improved protein quantific (View Slides)

      Keyword: Bioinformatics and Statistics

      Karin Schork

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    • P028 - A toolkit for the quantitative behavior of protein complexes (View Presentation)

      Keyword: Bioinformatics and Statistics

      Veit Schw

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    • P029 - BioInfra.Prot: Bioinformatics Services for Proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Michael Turewicz

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    • P030 - Database for fast weight-based peptide search (View Slides)

      Keyword: Bioinformatics and Statistics

      Dirk Winkelhardt

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    • P032 - Prediction of peptide spectral libraries by deep learning facilitate data-independent acquisition proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Yi Yang

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    • P033 - Evaluation of Six Software Tools for Data-independent Acquisition Mass Spectrometry-based Proteomics (View Slides)

      Keyword: Bioinformatics and Statistics

      Fangfei Zhang

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    • P034 - Proteomic glimpse at the M2-polarized microglia cells and their role in tumor progression (View Presentation)

      Keyword: Brain and CNS Diseases

      Shreya Ahuja

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    • P035 - Multiomics profiling of Alzheimer's Disease for the identification of serum autoantibody biomarkers (View Slides)

      Keyword: Brain and CNS Diseases

      Rodrigo Barderas

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    • P037 - CESI-MS of neuronal cultures differentiated from ALS patient-derived iPSCs, reveals differentially regulated PTMs and biological pat (View Slides)

      Keyword: Brain and CNS Diseases

      Andrea Matlock

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    • P038 - Distribution of Epimerized Amyloid beta Isoforms in the Sporadic Alzheimer's Disease (View Slides)

      Keyword: Brain and CNS Diseases

      Soumya Mukherjee

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    • P039 - Creation of truncation specific Dicer1 antibodies by a cross-discipline pipeline (View Slides)

      Keyword: Cancer

      Dorothy Ahlf Wheatcraft

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    • P040 - Novel Recombinant Protein SWATH/DIA Library Allows Detection of Low Abundance Protein Biomarkers from Colorectal Cancer Patient Plas (View Slides)

      Keyword: Cancer

      Seong Beom Ahn

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    • P041 - Identifying interaction partners and substrates of the oncogenic deubiquitinating protein USP7 in colorectal cancer (View Slides)

      Keyword: Cancer

      Ahood Aleidan

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    • P042 - Identification of protein biomarkers for prediction of response to platinum-based treatment regimens in non-small cell lung cancer (View Slides)

      Keyword: Cancer

      Franziska B

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    • P043 - Transgelin contributes to a poor response of metastatic renal cell carcinoma to sunitinib treatment (View Slides)

      Keyword: Cancer

      Pavla Bouchalova

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    • P044 - In search of Retinoblastoma protein family: protein enrichment and detection by targeted MS analysis in breast cancer derived cell l (View Slides)

      Keyword: Cancer

      Jakub Michal Dabrowski

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    • P045 - Identification of the prostate cancer exosome surface proteome and its application to detect prostate cancer in urine (View Slides)

      Keyword: Cancer

      Leyla Ayse Erozenci

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    • P046 - Mapping prostate cancer using a multi-omic approach, combining data independent and targeted strategies (View Slides)

      Keyword: Cancer

      Lee Gethings

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    • P047 - Mitochondrial Functional Dependence of Metastatic Melanoma Revealed by Proteomic Screening of a Large Cohort of Samples (View Slides)

      Keyword: Cancer

      Jeovanis Gil

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    • P048 - The context-dependent phenotype of frequently mutated genes: PTEN and KRAS. (View Slides)

      Keyword: Cancer

      Brittany Henderson

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    • P049 - Proteome profiling of MCF-7 and MDA-MB-231 breast cancer cells exposed to genistein, daidzein and a soy seed extract (View Slides)

      Keyword: Cancer

      Maria Ilies

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    • P050 - Identification of protein pathways involved in carcinogenesis of breast cancer using LC-MS/MS (View Presentation)

      Keyword: Cancer

      Mohd Nazri Ismail

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    • P051 - Proteasome Footprinting Reveals the Active Degradome of NSCLC in Peptide Resolution (View Slides)

      Keyword: Cancer

      Aaron Javitt

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    • P052 - The landscape of the SKBR3 breast cancer surfaceome and its impact on cancer proliferation (View Slides)

      Keyword: Cancer

      Arba Karcini

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    • P053 - Identification of proteome profile and its signaling networks in pancreatic cancer tissues (View Slides)

      Keyword: Cancer

      Yonghyo Kim

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    • P054 - Desmocollin-1 plays a role in breast cancer cell migration, invasion and metastasis and is modulated by parthenolide (View Slides)

      Keyword: Cancer

      Petr Lapcik

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    • P055 - Improved Unified Access to Cancer Proteogenomic Data (View Slides)

      Keyword: Cancer

      Caleb Lindgren

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    • P056 - Developing an Effective Proteomic Workflow for the Analysis of CAR T-Cells Therapies (View Slides)

      Keyword: Cancer

      Camille Lombard-Banek

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    • P057 - Proteomics profiling of colorectal cancer tissue-derived exosomes reveals non-invasive candidate markers involved in tumor prolifera (View Slides)

      Keyword: Cancer

      Madalena Monteiro

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    • P058 - Identification of autoantigens with diagnostic ability of colorectal cancer by immunoprecipitation coupled to mass spectrometry. (View Presentation)

      Keyword: Cancer

      Ana Montero Calle

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    • P059 - Multi-omics analyses of Mixed-lineage Acute Leukemia (MLL) focusing on the importance of glycosylation - a pilot study (View Slides)

      Keyword: Cancer

      Tiago Oliveira

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    • P060 - The context-dependent phenotype for oncogenes EGFR and PIK3CA (View Slides)

      Keyword: Cancer

      Lindsey Olsen

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    • P061 - Diagnostics of pleural effusions etiology using mass spectrometry-based targeted proteomics (View Slides)

      Keyword: Cancer

      Aleksandra Robak

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    • P062 - Mass spectrometry based profiling of histone post-translational modifications for identification of novel biomarkers in TNBC and pat (View Slides)

      Keyword: Cancer

      Giulia Robusti

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    • P063 - Refinement of targeted-MS parameters tailored for the detection of ultra-low abundant neoepitopes (View Slides)

      Keyword: Cancer

      Mogjib Salek

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    • P064 - Proteomic profiles of small cell lung cancer cell lines: Correlation with molecular subtypes and in vitro growth characteristics. (View Slides)

      Keyword: Cancer

      Be

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    • P065 - Global Proteomics and Phosphoproteomics Analysis of Formalin-Fixed Paraffin-Embedded and Frozen Tissue Sections reveal Intra-tumor h (View Slides)

      Keyword: Cancer

      Erika Velasquez

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    • P066 - Proteomics reveals heterogeneity in the glioblastoma microenvironment (View Slides)

      Keyword: Cancer

      Theodore Verhey

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    • P067 - Proteomic differences in early versus late brain metastases development in a cohort of lung adenocarcinoma patients (View Slides)

      Keyword: Cancer

      Nicole Woldmar

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    • P068 - Plasma protein profiling reveals low serum paraoxonase 1 levels in DCM patients (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Sabine Ameling

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    • P069 - Advanced glycation end products (AGE) PTM profiling on antigen processing machinery and MHC-II molecules in diabetes and T2DM syndro (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Cristina Clement

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    • P070 - Diagnosis and functionalization of the mitochondrial disease-associated ATAD3 gene cluster (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Daniella Hock

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    • P072 - DIA-MS proteotyping and superresolution imaging for subcellular phenotype and clinical subtype classification of aortic valve stenos (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Christof Lenz

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    • P073 - Stable Isotope Labelling in Mammals (SILAM) and proteomics characterization of individual vascular layers in sepsis-induced acute in (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Cristina Lorca

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    • P074 - Quantitative Proteomics and Comprehensive Bioinformatics Provides Insight into the Glucose-Lowering Independent Effects of Antidiabe (View Presentation)

      Keyword: Cardiovascular and Metabolic Diseases

      Cindy Manr

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    • P075 - Towards an optimized heart tissue preparation procedure for comprehensive proteomic analysis (View Presentation)

      Keyword: Cardiovascular and Metabolic Diseases

      Yvonne Reinders

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    • P076 - Cardiosphere Derived Cell-Induced Cellular Reprogramming of Transcriptional and Translational Machinery in Heart Failure with Preser (View Presentation)

      Keyword: Cardiovascular and Metabolic Diseases

      Daniel Soetkamp

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    • P077 - In-Depth Proteomic Characterisation of Different Aetiologies of Cardiomyopathy (View Slides)

      Keyword: Cardiovascular and Metabolic Diseases

      Claire Tonry

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    • P078 - Elucidating the Senescent Surfaceome for Development of Senolytic Human Therapies (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Nathan Basisty

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    • P079 - Dissecting the Ontogenic Remodeling of the Proteomic Landscape and Functionality of Hematopoietic Progenitor Cells in Normal Develop (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Maria Jassinskaja

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    • P080 - Leveraging computational approaches to explore protein interaction dynamics and localizations across space and time (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Michelle Kennedy

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    • P081 - Proteomics in In Vitro Toxicity Screening of Amorphous Silica Nanoforms (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Prem Kumarathasan

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    • P082 - Update on LM-GlycomeAtlas: An integrated visualization for mouse tissue glycome mapping data with lectin histochemistry (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Chiaki Nagai-Okatani

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    • P083 - Spatially resolved proteome profiling of FFPE tissues (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Andikan Nwosu

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    • P084 - Combining SDS with Subcritical water extraction for improved recovery of intracellular proteins (View Slides)

      Keyword: Cellular and Spatial Proteomics

      Hamam Said

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    • P085 - Proteomics of Human Milk: Definition of a Discovery Workflow for Clinical Research Studies (View Presentation)

      Keyword: Food and Nutrition

      Lo

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    • P086 - Proteomics and metabolomics analysis of wine from the Hungarian Tokaj wine region (View Slides)

      Keyword: Food and Nutrition

      Erdenetsetseg Nokhoijav

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    • P087 - Glycoproteomics of Saccharomyces cerevisiae yeast cell wall mannoproteins (View Slides)

      Keyword: Food and Nutrition

      Marie Yammine

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    • P088 - Proteomic analysis of the immune-challenged macrophage myddosome: composition, dynamics, and interactome (View Slides)

      Keyword: Immunology and Inflammation

      Caleb Bridgwater

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    • P089 - A time resolved Secretome Analysis of Hepatocytes during Acute-Phase Response (View Slides)

      Keyword: Immunology and Inflammation

      Sascha Knecht

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    • P090 - B cell and T cell proteomics for monitoring long term immune system dynamics (View Slides)

      Keyword: Immunology and Inflammation

      Michaela McCown

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    • P091 - The DNA Sensor cGAS is Decorated by Acetylation and Phosphorylation Modifications in the Context of Immune Signaling (View Slides)

      Keyword: Immunology and Inflammation

      Bokai Song

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    • P092 - Proteomic analysis of human corneal epithelial cells infected with Aspergillus flavus spores (View Presentation)

      Keyword: Infectious Diseases

      Divya Arunachalam

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    • P093 - SARS-CoV-2 Spike Interactome Promiscuously Facilitates Epithelial Cell Infection (View Slides)

      Keyword: Infectious Diseases

      Tom Casimir Bamberger

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    • P094 - 623 plasma samples defined blood-based signature for COVID-19 positivity and progression (View Slides)

      Keyword: Infectious Diseases

      Aleksandra Binek

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    • P095 - Influence of antibiotic therapy on lung proteome adaptation in murine pneumonia (View Slides)

      Keyword: Infectious Diseases

      Sascha Blankenburg

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    • P096 - MS-based Sars-Cov-2 protein detection in patients (Cov-MS): a successful community effort (View Slides)

      Keyword: Infectious Diseases

      Maarten Dhaenens

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    • P097 - Proteome analysis of Streptococcus suis under stress conditions and in host-pathogen interaction (View Slides)

      Keyword: Infectious Diseases

      Denise Dittmar

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    • P098 - CD8+ and CD4+ T Cell responses of COVID-19 patients are shaped by the SARS-CoV-2 epitope-associated mutational landscape (View Slides)

      Keyword: Infectious Diseases

      David Hamelin

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      Kimberly Lee

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      Jochen Schwenk

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      Soroush Shahryari Fard

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      Xinlei Sheng

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      Kristin Surmann

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      Bruno Tilocca

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      Xiaobo Yu

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      Fernando Corrales

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      Tim Van Den Bossche

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      Benjamin-Florian Hempel

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      Corinna Henkel

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      Janina Oetjen

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      Subash Adhikari

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      Lucila Aimo

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      Lionel Breuza

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      Sixue Chen

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      Claudia Di Carlo

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      Ugo Dionne

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      Johannes Griss

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      Erin Han

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      Jingnan Huang

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      Nathan Manes

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      Giulia Mantini

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      Anne Morgat

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      Harley Robinson

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      Christopher Adams

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      Alexandra Antonoplis

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      Venus Baghalabadi

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      Christina Bell

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      Joshua Charkow

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      Yun-En Chung

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      Amarjeet Flora

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      Sebastien Gallien

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      Ling Hao

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      Katrin Hartinger

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      Romain Huguet

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      Christie Hunter

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      Lisa Jurak

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      Samantha Knott

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    • P140 - diaPASEF: Bottom-up proteomics with near optimal ion usage (View Slides)

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      Scarlet Koch

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    • P141 - High throughput proteomics - Application of dia-PASEF for short gradients (View Slides)

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      Thomas Kosinski

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      Anna Kozyr

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      Magdalena Kuras

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    • P144 - UVPD Fragmentation of Intact Proteins: Comparison of 193 nm versus 213 nm Photoactivation (View Slides)

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      Michael Lanzillotti

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    • P145 - High resolution acquisition on a TIMS-QTOF for multiplexed targeted proteomics (View Slides)

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      Antoine Lesur

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    • P146 - DIA Performance in Discovery and Quantitation Analysis on New Orbitrap Exploris Mass Spectrometers (View Slides)

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      Yang Liu

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    • P147 - Robust Label Free Proteomics Performance with New Orbitrap Exploris 240 with Improved Upfront Separations (View Slides)

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      Daniel Lopez-Ferrer

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    • P148 - Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry (XL-MS) (View Presentation)

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      Markus Lubeck

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    • P149 - An Internal Standard-Triggered Parallel Reaction Monitoring Quantitative Assay for the Determination of Autophagy Activation (View Presentation)

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      Charlotte Macron

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      Victoria Miller

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      Joshua Nathan

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    • P152 - Microflow-Nanospray ESI-MS (MnESIMS) Platform for Human Plasma Proteomics (View Slides)

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      Na Parra

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    • P153 - SureQuant targeted MS workflow for Quantitative analysis of Ras and AKT signaling pathways (View Slides)

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      Bhavin Patel

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    • P154 - Quantification of Common and Troublesome CHO-HCPs by Internal Standard-Triggered Assay of Heavy Tryptic Peptides

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      Michael Poltash

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      Julian Saba

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    • P156 - Millisecond informatics: next generation real-time analytics for quantitative proteomics (View Slides)

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      Devin Schweppe

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    • P157 - Toward a Single Comprehensive Assay for Protein Expression of the Human Kinome (View Slides)

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      Robert Sprung

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    • P159 - A Versatile Isobaric Tag Enables Proteome Quantification in Data Dependent and Data Independent Acquisition Mode (View Slides)

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      Xiaobo Tian

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    • P160 - MRM-based quantification of plasma Apolipoprotein A-I and B100 to help in identifying coronary-artery disease (View Slides)

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      Yi Ling Wong

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      Leon Xu

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    • P162 - PASEF-PRM LIVE on the timsTOF Pro (View Slides)

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      He Zhu

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      Marta Zurawska

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    • P164 - A Proteomic sample preparation for mass spectrometry using an automated workstation (View Slides)

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      Qin Fu

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      Chris Hughes

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      Jarrod Sandow

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      Karsten Schnatbaum

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      Linda Berg Luecke

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      Ferdinando Cerciello

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    • P170 - Cross-lab evaluation of quality control for large-scale DIA-MS proteomics (View Presentation)

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      Tiannan Guo

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      Zeeshan Hamid

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      Amanda Helms

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      Tingting Li

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    • P174 - Preservation of Trypsin Activity at Elevated Temperatures for Optimized Proteome Digestion (View Slides)

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      Jessica Nickerson

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      Indira Pla Parada

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      Premy Shanthamoorthy

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    • P177 - Evaluation of immunodepletion strategies applied to the characterization of plasma proteome (View Slides)

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      Nat

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    • P178 - Validated isotope-labeled protein standards for absolute quantification using mass spectrometry (View Presentation)

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      Tove Bostr

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    • P180 - Development of plasma depletion method for high throughput plasma analysis by mass spectrometry (View Slides)

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      Blandine Chazarin

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    • P181 - Proteograph, a multi-nanoparticle-platform, enables deep unbiased plasma proteomics at scale and speed, significantly improving cove (View Presentation)

      Keyword: Plasma Proteomics and Secretome

      Juan Cuevas

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    • P182 - Facets of individual-specific, longitudinal plasma proteome profiles (View Slides)

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      Tea Dodig-crnkovic

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    • P183 - Mining the prostate cancer proteome using an ion mobility, high throughput approach for large cohort analyses (View Slides)

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      David Heywood

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    • P185 - Development of a modular workflow for precise DIA-MS analysis of three blood proteomes (View Slides)

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      Angela Mc Ardle

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    • P186 - High throughput quantitative plasma proteomics on the timsTOF pro platform (View Slides)

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      Nagarjuna Nagaraj

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    • P187 - Plasma Protein Biomarker Identification for Monitoring Molecular Changes in Smokers, Former Smokers, and E-Vapor Product Users Relat (View Slides)

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      Catherine Nury

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    • P188 - A novel workflow for comprehensive profiling of plasma exosomes using data-independent acquisitions (View Slides)

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      Sandip Kumar Patel

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    • P189 - In-depth serum proteomics identifies potential biomarkers for papillary thyroid carcinoma diagnostics (View Slides)

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      Xu Qian

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    • P190 - A Pilot proteomics study reveals differentially protein expression related to testosterone and gonadotropin changes in a short-term (View Slides)

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      Barbara Sahlin

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    • P191 - The accessible plasma proteome with Top 7 immunodepletion spin columns. A comprehensive study. (View Slides)

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      Aniel Sanchez

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    • P192 - Understanding cell development in 3D culture models and secretome characterization by proteomics (View Slides)

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      Guillermo Sol

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    • P194 - Characterisation of novel synaptic substrates of the deacetylase Sirtuin-2 (View Presentation)

      Keyword: Post-Translational Modifications

      Hatoon Alamri

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      Noguchi Rei

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      Min Huang

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      Yiran Liang

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      Santosh Misal

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